#File Generated by Hans J. Johnson
#Please contact hans-johnson@uiowa.edu for making enhancments/corrections
PROJECT(NIFTIUTILS)

INCLUDE_DIRECTORIES(${NIFTILIB_SOURCE_DIR} ${ZNZLIB_SOURCE_DIR})

ADD_EXECUTABLE(${PACKAGE_PREFIX}nifti_stats nifti_stats.c)
ADD_EXECUTABLE(${PACKAGE_PREFIX}nifti_tool nifti_tool.c)
ADD_EXECUTABLE(${PACKAGE_PREFIX}nifti1_test nifti1_test.c)
TARGET_LINK_LIBRARIES( nifti_stats ${PACKAGE_PREFIX}niftiio)
TARGET_LINK_LIBRARIES( nifti_tool  ${PACKAGE_PREFIX}niftiio)
TARGET_LINK_LIBRARIES( nifti1_test ${PACKAGE_PREFIX}niftiio)

INSTALL_TARGETS(/bin ${PACKAGE_PREFIX}nifti_stats ${PACKAGE_PREFIX}nifti_tool ${PACKAGE_PREFIX}nifti1_test)
INSTALL_FILES(/include "(\\.h)$")


ADD_TEST(${PACKAGE_PREFIX}nifti1_test_help ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test)
ADD_TEST(${PACKAGE_PREFIX}nifti1_test_n1 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test  -n1  ${NIFTI_SOURCE_DIR}/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz ${NIFTIUTILS_BINARY_DIR}/n1 )
ADD_TEST(${PACKAGE_PREFIX}nifti1_test_n2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test  -n2  ${NIFTI_SOURCE_DIR}/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz ${NIFTIUTILS_BINARY_DIR}/n2 )
ADD_TEST(${PACKAGE_PREFIX}nifti1_test_a2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test  -a2  ${NIFTI_SOURCE_DIR}/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz ${NIFTIUTILS_BINARY_DIR}/a2 )
ADD_TEST(${PACKAGE_PREFIX}nifti1_test_zn1 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test -zn1 ${NIFTI_SOURCE_DIR}/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz ${NIFTIUTILS_BINARY_DIR}/zn1 )
ADD_TEST(${PACKAGE_PREFIX}nifti1_test_zn2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test -zn2 ${NIFTI_SOURCE_DIR}/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz ${NIFTIUTILS_BINARY_DIR}/zn2 )
ADD_TEST(${PACKAGE_PREFIX}nifti1_test_za2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti1_test -za2 ${NIFTI_SOURCE_DIR}/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz ${NIFTIUTILS_BINARY_DIR}/za2 )

#The help screens always return 1; ADD_TEST(${PACKAGE_PREFIX}nifti_tool_help ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool)
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_n1 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool  -disp_hdr -infile ${NIFTIUTILS_BINARY_DIR}/n1 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_n2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool  -disp_hdr -infile ${NIFTIUTILS_BINARY_DIR}/n2 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_a2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool  -disp_hdr -infile ${NIFTIUTILS_BINARY_DIR}/a2 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_zn1 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -disp_hdr -infile ${NIFTIUTILS_BINARY_DIR}/zn1 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_zn2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -disp_hdr -infile ${NIFTIUTILS_BINARY_DIR}/zn2 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_za2 ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -disp_hdr -infile ${NIFTIUTILS_BINARY_DIR}/za2 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_diff_hdr ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -diff_hdr -infile ${NIFTIUTILS_BINARY_DIR}/zn1 ${NIFTIUTILS_BINARY_DIR}/zn1 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_diff_nims ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -diff_nim -infile ${NIFTIUTILS_BINARY_DIR}/zn1 ${NIFTIUTILS_BINARY_DIR}/zn1 )

ADD_TEST(${PACKAGE_PREFIX}nifti_tool_copy_brick_list ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -cbl -prefix cbl_zn1.nii -infile ${NIFTIUTILS_BINARY_DIR}/zn1.nii.gz[0,1])
#ADD_TEST(${PACKAGE_PREFIX}nifti_tool_copy_collapsed_image /bin/sh ${NIFTI_SOURCE_DIR}/utils/rmthenrun cci_zn1.nii ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -cci 2 2 2 -1 -1 -1 -1 -prefix cci_zn1.nii -infile ${NIFTIUTILS_BINARY_DIR}/zn1.nii.gz )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_disp_ci ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -disp_ci 2 2 2 -1 0 0 0  -infile ${NIFTIUTILS_BINARY_DIR}/zn1.nii.gz )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_disp_ts ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -disp_ts 2 2 2 -infile ${NIFTIUTILS_BINARY_DIR}/zn1.nii.gz )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_strip_extras ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -strip_extras -infile ${NIFTIUTILS_BINARY_DIR}/zn1.nii.gz )

# This test needs a file that has extensions to remove
#ADD_TEST(${PACKAGE_PREFIX}nifti_tool_rm_ext /bin/sh ${NIFTI_SOURCE_DIR}/utils/rmthenrun rm_ext.nii ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -rm_ext ALL -prefix rm_ext.nii -infile ${NIFTIUTILS_BINARY_DIR}/zn1.nii.gz )

ADD_TEST(${PACKAGE_PREFIX}nifti_tool_check_hdr ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -check_hdr -infile ${NIFTIUTILS_BINARY_DIR}/za2 )
ADD_TEST(${PACKAGE_PREFIX}nifti_tool_check_nim ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_tool -check_nim -infile ${NIFTIUTILS_BINARY_DIR}/za2 )

FOREACH(DISTRIBUTION CORREL TTEST FTEST ZSCORE CHISQ BETA BINOM GAMMA POISSON NORMAL FTEST_NONC CHISQ_NONC LOGISTIC LAPLACE UNIFORM TTEST_NONC WEIBULL CHI INVGAUSS EXTVAL PVAL LOGPVAL LOG10PVAL )
    ADD_TEST(${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats 0:4:1 ${DISTRIBUTION})
    ADD_TEST(q${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -q 0:4:1 ${DISTRIBUTION})
    ADD_TEST(q1${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -q 0:4:1 ${DISTRIBUTION} 1 1 1)
    ADD_TEST(d${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -d 0:4:1 ${DISTRIBUTION})
    ADD_TEST(d1${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -d 0:4:1 ${DISTRIBUTION} 1 1 1)
    ADD_TEST(1${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -1 0:4:1 ${DISTRIBUTION})
    ADD_TEST(11${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -1 0:4:1 ${DISTRIBUTION} 1 1 1)
    ADD_TEST(z${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -z 0:4:1 ${DISTRIBUTION})
    ADD_TEST(z1${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -z 0:4:1 ${DISTRIBUTION} 1 1 1)
    ADD_TEST(h${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -h 0:4:1 ${DISTRIBUTION})
    ADD_TEST(h1${PACKAGE_PREFIX}nifti_stats_${DISTRIBUTION}_test ${NIFTIUTILS_BINARY_DIR}/${PACKAGE_PREFIX}nifti_stats -h 0:4:1 ${DISTRIBUTION} 1 1 1)
ENDFOREACH(DISTRIBUTION)