#!/bin/sh # DEV=$1 OUTDIR=$2 ARGS=$3 if [ "$DEV" = "" ]; then DEV=x11 fi echo heatmap1.. pl -prefab heatmap data=curve1.dat y=1 x=2 title="this is heatmap1" \ -$DEV -o ${OUTDIR}heatmap1.$DEV $ARGS echo heatmap2.. pl -prefab heatmap data=snpmap.dat header=yes y=1 x=2 ycats=yes xbinsize=5 \ colorlist=white,limegreen,green,teal,blue,purple,black title="this is heatmap2" \ -$DEV -o ${OUTDIR}heatmap2.$DEV $ARGS echo heatmap2a.. pl -prefab heatmap data=snpmap.dat header=yes y=1 x=2 ycats=yes xbinsize=5 \ colorlist=white,limegreen,green,teal,blue,purple,black title="here's heatmap2a" titledet="size=15" \ cutofflist=35,25,10,1 \ -$DEV -o ${OUTDIR}heatmap2a.$DEV $ARGS echo heatmap3.. pl -prefab heatmap data=data26 x=1 xcats=yes y=2 ycats=yes contentfield=3 \ outline="color=black width=5" title="this is heatmap3" \ -$DEV -o ${OUTDIR}heatmap3.$DEV $ARGS echo heatmap4.. pl -prefab heatmap data=data26 x=1 xcats=yes y=2 ycats=yes contentfield=3 symbol="shape=circle radius=0.1" \ legendsep=0.2 zerocolor=white title="here's heatmap4" \ -$DEV -o ${OUTDIR}heatmap4.$DEV $ARGS