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BLASTP 2.2.4 [Aug-26-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1038588547-028642-15893

Query= lcl|1
         (87 letters)


Database: Homo sapiens protein sequences 
           39,341 sequences; 15,598,025 total letters

 
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please refer to the BLAST FAQs






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Taxonomy reports




 Distribution of 1 Blast Hits on the Query Sequence








                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_689464.1|  defensin, beta 106; defensin, beta 6 [Homo...   110   2e-25

Alignments

>ref|NP_689464.1| defensin, beta 106; defensin, beta 6 [Homo sapiens]
 gb|AAM93908.1| defensin beta 106 [Homo sapiens]
 dbj|BAC10631.1| beta-defensin-6 [Homo sapiens]
          Length = 65

 Score =  110 bits (274), Expect = 2e-25
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 21 AKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCRTIQPCGSIID 69
          AKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCRTIQPCGSIID
Sbjct: 17 AKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCRTIQPCGSIID 65





  Database: Homo sapiens protein sequences
    Posted date:  Nov 27, 2002 12:59 AM
  Number of letters in database: 15,598,025
  Number of sequences in database:  39,341
  
Lambda     K      H
   0.327    0.142    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,148,972
Number of Sequences: 39341
Number of extensions: 121780
Number of successful extensions: 393
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 1
length of query: 87
length of database: 15,598,025
effective HSP length: 63
effective length of query: 24
effective length of database: 13,119,542
effective search space: 314869008
effective search space used: 314869008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 79 (35.0 bits)