test_FSSP

Read in 1cnv.fssp
Reached equiv_title
...1cnv.fssp read
head_rec.author ['M.Hennig']
head_rec.compnd ['concanavalin', 'b']
head_rec.database 2645
head_rec.header SEED PROTEIN
head_rec.nalign 214
head_rec.pdbid 1cnv
head_rec.seqlength 283
head_rec.source (canavalia ensiformis) jack bean

len(sum_rec) = 214; head_rec.nalign = 214
The above two numbers should be the same

Create a multiple alignment instance using Bio.Align
...Done

Filter in percent ID's >= 15%

number of records filtered in: 11

Records filtered in [1, 2, 3, 4, 6, 7, 8, 9, 118, 134, 165]

Let's Pickle this

Filter by name

name list ['2hvm0', '1hvq0', '1nar0', '2ebn0']
2 :    2: 1cnv   2hvm   39.2  1.7  270   273   42      0      0    10 S    hevamine (chitinaseLYSOZYME) 

3 :    3: 1cnv   1hvq   39.0  1.7  271   273   41      0      0    10 S    hevamine a 

5 :    5: 1cnv   1nar   20.0  3.1  246   289   13      0      0    27 S    Narbonin 

11 :   11: 1cnv   2ebn   16.9  3.0  215   285   13      0      0    25 S    Endo-beta-n-acetylglucosaminidase f1 (endoglycosidase f

2 : Ps
3 : Ps
5 : ..
11 : ..
