BLAST Search Results

    BLASTN 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|1348916|gb|G26684.1|G26684 human STS STS_D11570.
             (285 letters)

    Database: Non-redundant Database of GenBank STS Division
               89,405 sequences; 32,867,852 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 4 Blast Hits on the Query Sequence

                                                                       Score     E
    Sequences producing significant alignments:                        (bits)  Value

    gb|G26684|G26684  human STS STS_D11570. >gi|1375195|gb|G2694...   517  e-146
    dbj|AU026763.1|AU026763  Rattus norvegicus, OTSUKA clone, OT...    32  1.7
    gb|G55508.1|G55508  SHGC-100856 Human Homo sapiens STS genom...    32  1.7
    gb|G03725|G03725  human STS WI-344.                                32  1.7

     gb|G26684|G26684 human STS STS_D11570. >gi|1375195|gb|G26945|G26945 human STS
               SHGC-32699.
               Length = 285

     Score =  517 bits (261), Expect = e-146
     Identities = 285/285 (100%)
     Strand = Plus / Plus

    Query: 1   gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatccattcaca 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 1   gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatccattcaca 60

    Query: 61  cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnactnttgagc 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 61  cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnactnttgagc 120

    Query: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtnctggaggc 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtnctggaggc 180

    Query: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttgtagcgcaa 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttgtagcgcaa 240

    Query: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285
               |||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285

     dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA clone, OT33.16/752f07, microsatellite
               sequence, sequence tagged site
               Length = 307

     Score = 32.2 bits (16), Expect = 1.7
     Identities = 16/16 (100%)
     Strand = Plus / Plus

    Query: 221 ggaaagttcttgtagc 236
               ||||||||||||||||
    Sbjct: 32  ggaaagttcttgtagc 47

     gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens STS genomic, sequence tagged site
               Length = 711

     Score = 32.2 bits (16), Expect = 1.7
     Identities = 18/19 (94%)
     Strand = Plus / Plus

    Query: 210 gaaatnaaaatggaaagtt 228
               ||||| |||||||||||||
    Sbjct: 588 gaaataaaaatggaaagtt 606

     gb|G03725|G03725 human STS WI-344.
               Length = 246

     Score = 32.2 bits (16), Expect = 1.7
     Identities = 16/16 (100%)
     Strand = Plus / Minus

    Query: 260 ctcaataaatgctagt 275
               ||||||||||||||||
    Sbjct: 178 ctcaataaatgctagt 163

      Database: Non-redundant Database of GenBank STS Division
        Posted date:  Dec 18, 1999  7:45 PM
      Number of letters in database: 32,867,852
      Number of sequences in database:  89,405

    Lambda     K      H
        1.37    0.711     1.31

    Gapped
    Lambda     K      H
        1.37    0.711     1.31

    Matrix: blastn matrix:1 -3
    Gap Penalties: Existence: 5, Extension: 2
    Number of Hits to DB: 3932
    Number of Sequences: 89405
    Number of extensions: 3932
    Number of successful extensions: 1177
    Number of sequences better than 10.0: 4
    length of query: 285
    length of database: 32,867,852
    effective HSP length: 17
    effective length of query: 268
    effective length of database: 31,347,967
    effective search space: 8401255156
    effective search space used: 8401255156
    T: 0
    A: 0
    X1: 6 (11.9 bits)
    X2: 10 (19.8 bits)
    S1: 12 (24.3 bits)
    S2: 15 (30.2 bits)