BLAST Search Results

    BLASTP 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|128372|sp|P04846|NLPA_ECOLI LIPOPROTEIN-28 PRECURSOR.
             (272 letters)

    Database: Non-redundant SwissProt sequences
               82,258 sequences; 29,652,561 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 9 Blast Hits on the Query Sequence

    blast_tmp 24  CDQSSSDAKHIKVGVINGAEQDXXXXXXXXXXXXYGLDVELVGFSGSLLPNDATNHGELD 83
    P04846    24  CDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELD 83
    P28635    23  CGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDID 82
    Q08870    24         AEKLKVGVISGPEHKVMEVAAKIAKEKYNRDVELVVFTDYATPNAALDKGDLD 76
    Q08868    40            IKVGVMSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLD 89
    P31728    36            IKVGVMSGPEHQVAEIAAKVAKEKYGLDVQFVEFNDYALPNEAVSKGDLD 85
    Q08869    40            LKVGVMTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLD 89
    P54594    23      SAEHESIKIGI---AESDGAINYIAQKAEEAGLDIQLIPFSDYAESDIALANKEID 76
                                           \
                                           |
                                           W

    blast_tmp 84  ANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNX 143
    P04846    84  ANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNL 143
    P28635    83  ANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNL 142
    Q08870    77  LNAFQHKPYLDNQIQEKGYKLVPVGNTFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNL 136
    Q08868    90  ANAFQHKPYLDKDSQSKGLNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNL 150
                                      \
                                      |
                                      N
    P31728    86  ANAMQHKPYLDEDAKAKNLNLVIVGNTFVYPLAGYSKKIKNVNELQDGAKVVVPNDPTNR 146
                                      \
                                      |
                                      N
    Q08869    90  ANAFQTVPYLEQEVKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNT 149
    P54594    77  ANAFQTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRDISRGAVVSVPDKAFDF 136

    blast_tmp 144 XXXXXXXXXXXXXXXXEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIIS 203
    P04846    144 GRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIIS 203
    P28635    143 GRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVIN 202
    Q08870    137 ARALILLEKQDLIKLRADAGLKATSVDIIENPRKLVIQEIEAPLLPRTLDD--VAFSIIN 194
    Q08868    151 ARALILLEKQGLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDD--VDLAVVN 208
    P31728    147 GRALILLEKQGLIKLKDANNLLSTVLDIVENPKKLNITEVDTSVAARALDD--VDLAVVN 204
    Q08869    150 ARALLLLQAHGLLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDD--VELAVIN 207
    P54594    137 GRALTVLQEAGLLTLKNGFNGTGSVDMIKDNPRHLKLKAVRQQDAV-----SGADVFVMK 191

    blast_tmp 204 TTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETI 263
    P04846    204 TTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETI 263
    P28635    203 TTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKV 262
    Q08870    195 TTYAGQNGLTPTKDGIFVEDKDSPYVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEE 254
    Q08868    209 NTYAGQVGLNTQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKH 268
    P31728    205 NTYAGQVGLNAQDDGVFVEDKDSPYVNIIVSRTDNKDSKAVQDFIKSYQTEEVYQEAQKH 264
    Q08869    208 NTYAGQAGLSPDKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKL 267
    P54594    192 PSEAKKAGLNPKKHTLKSGGMSEEEMNLIVVRAEDQDREALQTILELYQADDTAAFIEKE 252
                                      \
                                      |
                                      L
    P51887    32    YMRQSRMSSYNYMPYYEDENSPYVYSYVPAPDTE-AEPVPEAQQSWQCPQ         82
                                                                \
                                                                |
                                                               AS
    P42499    690        GKSLVHDLVFKESEET--VNKLLSREEDKNVEKMRTFGKEHQN----KAAFLV 737
                                                         \
                                                         |
                                                         T

    blast_tmp 264 FNGGAVPGW 272
    P04846    264 FNGGAVPGW 272
    P28635    263 FNGGAVKGW 271
    Q08870    255 FKGAMIKGW 263
    Q08868    269 FKDGVVKGW 277
    P31728    265 FKDGVVKGW 273
    Q08869    268 FNGGVVKGW 276
    P54594    253 YQGDLV    258
    P42499    738 VN        739

      Database: Non-redundant SwissProt sequences
        Posted date:  Dec 28, 1999  4:33 PM
      Number of letters in database: 29,652,561
      Number of sequences in database:  82,258

    Lambda     K      H
       0.313    0.134    0.381

    Gapped
    Lambda     K      H
       0.270   0.0470    0.230

    Matrix: BLOSUM62
    Gap Penalties: Existence: 11, Extension: 1
    Number of Hits to DB: 12949026
    Number of Sequences: 82258
    Number of extensions: 482987
    Number of successful extensions: 844
    Number of sequences better than 10.0: 9
    Number of HSP's better than 10.0 without gapping: 7
    Number of HSP's successfully gapped in prelim test: 2
    Number of HSP's that attempted gapping in prelim test: 827
    Number of HSP's gapped (non-prelim): 9
    length of query: 272
    length of database: 29,652,561
    effective HSP length: 53
    effective length of query: 219
    effective length of database: 25,292,887
    effective search space: 5539142253
    effective search space used: 5539142253
    T: 11
    A: 40
    X1: 16 ( 7.2 bits)
    X2: 38 (14.8 bits)
    X3: 64 (24.9 bits)
    S1: 42 (21.9 bits)
    S2: 64 (29.3 bits)