BLAST Search Results

    BLASTP 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN.
             (250 letters)

    Database: Non-redundant SwissProt sequences
               82,258 sequences; 29,652,561 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 15 Blast Hits on the Query Sequence

                                                                       Score     E
    Sequences producing significant alignments:                        (bits)  Value

    sp|P15394|REPA_AGRTU  REPLICATING PROTEIN                         514  e-146
    sp|P19922|HYIN_BRAJA  INDOLEACETAMIDE HYDROLASE (IAH) (INDOL...    34  0.29
    sp|P06422|VE2_HPV08  REGULATORY PROTEIN E2                         32  0.86
    sp|Q05152|CCAB_RABIT  VOLTAGE-DEPENDENT N-TYPE CALCIUM CHANN...    32  1.5
    sp|P02256|H1_PARAN  HISTONE H1, GONADAL                            31  2.5
    sp|P51592|HYDP_DROME  HYPERPLASTIC DISCS PROTEIN (HYD PROTEIN)     31  3.3
    sp|P08392|ICP4_HSV11  TRANS-ACTING TRANSCRIPTIONAL PROTEIN I...    31  3.3
    sp|P33438|GLT_DROME  GLUTACTIN PRECURSOR                           31  3.3
    sp|P55268|LMB2_HUMAN  LAMININ BETA-2 CHAIN PRECURSOR (S-LAMI...    30  4.3
    sp|P39713|YAG1_YEAST  HYPOTHETICAL ZINC-TYPE ALCOHOL DEHYDRO...    30  4.3
    sp|Q24704|H1_DROVI  HISTONE H1                                     29  7.5
    sp|Q59567|TOP1_MYCTU  DNA TOPOISOMERASE I (OMEGA-PROTEIN) (R...    29  9.8
    sp|Q61085|RHOP_MOUSE  GTP-RHO BINDING PROTEIN 1 (RHOPHILIN)        29  9.8
    sp|P46466|PRS4_ORYSA  26S PROTEASE REGULATORY SUBUNIT 4 HOMO...    29  9.8
    sp|Q01989|MYS9_DROME  MYOSIN HEAVY CHAIN 95F (95F MHC)             29  9.8

    blast_tmp 1    MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
    P15394    1    MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
    P39713    228                                                       ELAEKMG 234

    blast_tmp 61   GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
    P15394    61   GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
    Q05152    822                                                     PGRDAPRGP 830
    P08392    59                                                        RRDGRAP 65
    P33438    644                                       EYVRAQEARQQEFIREREQRRRE 666
    P55268    1671                                       KLKRAGNSLAASTAEETAGSAQ 1692
    P39713    235  ARVYDPTAHAAKESIDYLRSIADGGDG                                  261
    Q59567    842                                                       KRRGRQS 848
    P46466    19                                                            RKP 21

    blast_tmp 121  AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
    P15394    121  AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
    P06422    258                                           ---PQKEQRRS-------- 265
    Q05152    831  PGGKSRPDGSEAPEGADPPRRHHRHRDK------DK---AP---ATVPSAGE-------- 870
    P02256    147  AAAKRKAALAKKKAAAAKRKAAAKAKKA------KK---PK---KKAAKKAK-------- 186
    P08392    66   AAGTDAGEDAGDAVSPRQLALLASMVEE------AVRTIPT---PDPAASPP-------- 108
    P33438    667  QQLRDQQRYPQQ----EPREQQDERIRQ------QR---EQ---EERLRQQR-------- 702
    P55268    1693 GRAQEAEQLLRGPLGDQYQTVKALAERK------AQ---GVLAAQARAEQLR-------- 1735
    Q24704    124                 AKPKA--SAVEKK------TK---KV---NASAARAT-------- 146
    Q59567    849  ASAPPLRELGTDPASGKPMVI--KDGRF------GP---YV---TDGETNAS-------- 886
    P46466    22   GGDGDKKDRKFEPSAAPSR--VGRKQRKQKGPEAAA---RL---PNVAPLSKCRLRLLKL 73
    Q01989    936                             R------AA---KE---AEEQRQRE-------- 948

    blast_tmp 161  Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
    P15394    161  Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
    P19922    12    ----QRRDLRGRDRRS---ASRTDARR----QS--AAERGCRRSQRG-SAE-GCACGR- 54
    P06422    266  R----SRHRT-RSRSRS---LSRVRAVG----ST--TVSRSRSSSLTK-AVR-PRSRSR- 308
    Q05152    871  Q----DRAEALRAEGGE---LGPREERG----RP----RRSRSKEAPG-APEVRSDRGRG 914
    P02256    187  K----PAKKSPKKAKKP---AKKSPKKK----KA--KRSPKKAKKAAG-KRK-PAAKKA- 230
    P51592    1967  ----DKQDSISGRINN---LSPMTESY----DT--DDELANLEEFNA-DVQ-MSASSM- 2009
    P08392    109  RTPAFRADDDDGDEYDD---AADAAGDR----AP--ARGREREAPLRGAYPD-PTDRLS- 157
    P33438    703  E----QE-----------------ERLR----QQRELEERIRQQQERE-QYE-REQQER- 734
    P55268    1736 D----EARDLLQAAQDK---LQRLQELE----GT--YEENERA                  1765
    Q24704    147  K----SKSSTSTTKKAA---GAADKKLS----KS--AAAKKNVEKKKA-DKE-KAKDAK- 190
    Q59567    887  L----RKGDDVASITD--------ERAA----EL--LADRRARGPAKR-PAR-KAARKV- 925
    Q61085    584                                                            R- 584
    P46466    74   E----RVKDYLLMEEEF---VAAQERLRPTEDKT--EEDRSKVDDLRG             112
    Q01989    949  E----IENKRLKAEMETRRKAAEAQRLR----QE--EEDRRAALALQE-QLE-KEAKDD- 995

    blast_tmp 205  --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
    P15394    205  --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
    P19922    55   --QTGPRAA-----RSACCTACPSRSRRMSTT------EGRPNFN---GVPANKDF  94
    P06422    309  --SRGRATATSRRRAGRGS---PRRRRSTSRSPSTNTFKRSQRGG---GRRGR     353
    Q05152    915  PCPEGGRRHHRRGSPEEAAEREPRRHRAHRHG------PDPGKEGPASGTRGER    962
    P02256    231  --RRSPRKAGKRRSPKK                                         245
    P51592    2010 --PSGSQGTRRH------AFFARSESTLTLGC------SAPEGF              2039
    P08392    158  --PRPPAQPPRRRRHGR                                         172
    P33438    735  --EQREREELERQQRER                                         749
    Q24704    191  --KTGTIKAKPTTAKAKSSATKPKTPKPKTTS------AKPKK               225
    Q59567    926  --PA--KKAAKR                                              933
    Q61085    585  --GTGPRRAALLWNQRECGFETP-MPTRTRP                           612
    Q01989    996  --AKYRQQLEQERRDHELALRLANESNGQVED------SPP                 1028

      Database: Non-redundant SwissProt sequences
        Posted date:  Dec 18, 1999  8:26 PM
      Number of letters in database: 29,652,561
      Number of sequences in database:  82,258

    Lambda     K      H
       0.317    0.133    0.395

    Gapped
    Lambda     K      H
       0.270   0.0470    0.230

    Matrix: BLOSUM62
    Gap Penalties: Existence: 11, Extension: 1
    Number of Hits to DB: 14679054
    Number of Sequences: 82258
    Number of extensions: 599117
    Number of successful extensions: 1508
    Number of sequences better than 10.0: 15
    Number of HSP's better than 10.0 without gapping: 4
    Number of HSP's successfully gapped in prelim test: 11
    Number of HSP's that attempted gapping in prelim test: 1504
    Number of HSP's gapped (non-prelim): 15
    length of query: 250
    length of database: 29,652,561
    effective HSP length: 51
    effective length of query: 199
    effective length of database: 25,457,403
    effective search space: 5066023197
    effective search space used: 5066023197
    T: 11
    A: 40
    X1: 16 ( 7.3 bits)
    X2: 38 (14.8 bits)
    X3: 64 (24.9 bits)
    S1: 41 (21.7 bits)
    S2: 63 (29.0 bits)