BLAST Search Results

    BLASTX 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|1593528|gb|G29977.1|G29977 human STS SHGC-35896.
             (608 letters)

    Database: Non-redundant SwissProt sequences
               82,258 sequences; 29,652,561 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 12 Blast Hits on the Query Sequence

                                                                       Score     E
    Sequences producing significant alignments:                        (bits)  Value

    sp|P29400|CA54_HUMAN  COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR         31  1.6
    sp|Q09455|YQ34_CAEEL  PUTATIVE CUTICLE COLLAGEN C09G5.4            31  2.8
    sp|Q07092|CA1F_HUMAN  COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR        31  2.8
    sp|P20631|CC13_CAEEL  CUTICLE COLLAGEN 13 PRECURSOR                31  2.8
    sp|P20630|CC12_CAEEL  CUTICLE COLLAGEN 12 PRECURSOR                31  2.8
    sp|P34391|YLS6_CAEEL  PUTATIVE CUTICLE COLLAGEN F09G8.6            30  3.7
    sp|P17140|CA24_CAEEL  COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR         30  4.8
    sp|P39061|CA1H_MOUSE  COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSO...    29  6.3
    sp|Q02388|CA17_HUMAN  COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR ...    29  8.3
    sp|P13941|CA13_RAT  COLLAGEN ALPHA 1(III) CHAIN                    29  8.3
    sp|P02461|CA13_HUMAN  COLLAGEN ALPHA 1(III) CHAIN PRECURSOR        29  8.3

     sp|P29400|CA54_HUMAN COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR
                Length = 1685

     Score = 31.3 bits (69), Expect = 1.6
     Identities = 16/42 (38%), Positives = 19/42 (45%)
     Frame = +1

    Query: 460  PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
                P  +  + K   G P IPG+ G      PQG  G  G P GP
    Sbjct: 1364 PSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG-PTGP 1404

     sp|Q09455|YQ34_CAEEL PUTATIVE CUTICLE COLLAGEN C09G5.4
               Length = 323

     Score = 30.5 bits (67), Expect = 2.8
     Identities = 12/27 (44%), Positives = 15/27 (55%)
     Frame = +1

    Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAP 576
               G+P  PG+GG      P+G  G  GAP
    Sbjct: 156 GQPGHPGQGGSQGPAGPRGPAGDAGAP 182

     sp|Q07092|CA1F_HUMAN COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR
               Length = 1603

     Score = 30.5 bits (67), Expect = 2.8
     Identities = 16/42 (38%), Positives = 17/42 (40%)
     Frame = +1

    Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
               P  KGE      GRP  PG+ G      P G  G  G P  P
    Sbjct: 743 PGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPP 784

     sp|P20631|CC13_CAEEL CUTICLE COLLAGEN 13 PRECURSOR
               Length = 316

     Score = 30.5 bits (67), Expect = 2.8
     Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
     Frame = +1

    Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
               S    G P  PG+ G +  G P  QG  G  GAP  P     P
    Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292

     sp|P20630|CC12_CAEEL CUTICLE COLLAGEN 12 PRECURSOR
               Length = 316

     Score = 30.5 bits (67), Expect = 2.8
     Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
     Frame = +1

    Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
               S    G P  PG+ G +  G P  QG  G  GAP  P     P
    Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292

     sp|P34391|YLS6_CAEEL PUTATIVE CUTICLE COLLAGEN F09G8.6
               Length = 278

     Score = 30.1 bits (66), Expect = 3.7
     Identities = 12/30 (40%), Positives = 15/30 (50%)
     Frame = +1

    Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
               G+P   G+GG      P+G  G  GAP  P
    Sbjct: 155 GQPGADGQGGAPGPAGPEGPAGDAGAPGAP 184

     sp|P17140|CA24_CAEEL COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR
                Length = 1758

     Score = 29.7 bits (65), Expect = 4.8
     Identities = 19/48 (39%), Positives = 21/48 (43%)
     Frame = +1

    Query: 460  PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
                P  KGE      G+P  PG+ G    G P GK G  GAP  P     P
    Sbjct: 1059 PGFKGETGLPGYGQPGQPGEKG--LPGIP-GKAGRQGAPGSPGQDGLP 1103

     Score = 29.7 bits (65), Expect = 4.8
     Identities = 18/42 (42%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
     Frame = +1

    Query: 460 PQNKGEVSKXSXGRPXIPG-KGGXNXXGXPQGKXGXXGAPXGP 585
               P NKGE      G+P  PG KG     G P G  G  G P  P
    Sbjct: 675 PGNKGEAGYGQPGQPGFPGAKGDGGLPGLP-GTPGLQGMPGEP 716

     sp|P39061|CA1H_MOUSE COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSOR [CONTAINS: ENDOSTATIN]
               Length = 1315

     Score = 29.3 bits (64), Expect = 6.3
     Identities = 12/30 (40%), Positives = 15/30 (50%)
     Frame = +1

    Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
               GRP +PG+ G      P+G  G  G P  P
    Sbjct: 842 GRPGLPGQQGVQGPSGPKGDKGEVGPPGPP 871

     sp|Q02388|CA17_HUMAN COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR (LONG-CHAIN COLLAGEN) (LC
                COLLAGEN)
                Length = 2944

     Score = 29.0 bits (63), Expect = 8.3
     Identities = 13/37 (35%), Positives = 16/37 (43%)
     Frame = +1

    Query: 460  PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXG 570
                P  KGE      G P +PG+ G      P+G  G  G
    Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG 1477

     sp|P13941|CA13_RAT COLLAGEN ALPHA 1(III) CHAIN
               Length = 636

     Score = 29.0 bits (63), Expect = 8.3
     Identities = 17/48 (35%), Positives = 18/48 (37%)
     Frame = +1

    Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
               P  KGE        P  PG  G      PQG  G  G+P GP     P
    Sbjct: 2   PGEKGEGGPPGAAGP--PGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 47

     sp|P02461|CA13_HUMAN COLLAGEN ALPHA 1(III) CHAIN PRECURSOR
               Length = 1466

     Score = 29.0 bits (63), Expect = 8.3
     Identities = 13/32 (40%), Positives = 13/32 (40%)
     Frame = +1

    Query: 490 SXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
               S G P  PG  G      P G  G  GAP  P
    Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917

      Database: Non-redundant SwissProt sequences
        Posted date:  Dec 28, 1999  4:33 PM
      Number of letters in database: 29,652,561
      Number of sequences in database:  82,258

    Lambda     K      H
       0.318    0.135    0.401

    Gapped
    Lambda     K      H
       0.270   0.0470    0.230

    Matrix: BLOSUM62
    Gap Penalties: Existence: 11, Extension: 1
    Number of Hits to DB: 27301044
    Number of Sequences: 82258
    Number of extensions: 501818
    Number of successful extensions: 2382
    Number of sequences better than 10.0: 22
    Number of HSP's better than 10.0 without gapping: 10
    Number of HSP's successfully gapped in prelim test: 3
    Number of HSP's that attempted gapping in prelim test: 2052
    Number of HSP's gapped (non-prelim): 298
    length of query: 202
    length of database: 29,652,561
    effective HSP length: 50
    effective length of query: 152
    effective length of database: 25,539,661
    effective search space: 3882028472
    effective search space used: 3882028472
    frameshift window, decay const: 50,  0.1
    T: 12
    A: 40
    X1: 16 ( 7.3 bits)
    X2: 38 (14.8 bits)
    X3: 64 (24.9 bits)
    S1: 41 (21.7 bits)
    S2: 62 (28.6 bits)